GUI for AFM data analysis with an emphasis on biological specimens
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Updated
Mar 25, 2024 - Python
GUI for AFM data analysis with an emphasis on biological specimens
Semi-affine Elastic Network Optimizer to calculate forces in collagen or other biopolymer networks.
Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measure of contractile strength.
Shape-Out has been superseded by Shape-Out 2.
Bayesian Traction Force Microscopy
Analysis used in Damodaran et.al, Molecular Biology of the Cell , 2018
Subroutines and functions written in MATLAB can predict stresses directly from phase images based on data trained from traction force and monolayer stress microscopy
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