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Pull requests: tskit-dev/tskit

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Pull requests list

Add ability to plot annotations (e.g. genes) along the x-axis
#3002 opened Sep 25, 2024 by hyanwong Loading…
1 of 3 tasks
1
3
Add provenance to HTML output
#3001 opened Sep 25, 2024 by benjeffery Loading…
1
Clarify that path_length is a count, and that distance_between exists
#2995 opened Sep 24, 2024 by hyanwong Loading…
4
Better documentation of draw_svg y_ticks AUTOMERGE-REQUESTED Ask Mergify to merge this PR
#2993 opened Sep 24, 2024 by hyanwong Loading…
6
Feat : add reciprocal monophyly function to Tree class
#2974 opened Jul 24, 2024 by Silloky • Draft
1 of 2 tasks
6
Switch to ruff linting
#2952 opened May 23, 2024 by benjeffery Loading… Python 0.5.9
15
time windows in statistics
#2948 opened May 9, 2024 by petrelharp • Draft Python 0.5.9
24
Implement efficient seeking from non-null trees using tree_pos
#2911 opened Feb 26, 2024 by duncanMR • Draft
3 tasks
Python 0.5.10
4
Support all-nodes matching in LSHMM
#2861 opened Oct 12, 2023 by jeromekelleher • Draft
1
Add tests for genotype imputation
#2815 opened Aug 7, 2023 by szhan Loading…
2 of 6 tasks
Python 0.5.10
1
@szhan
28
add_pbs
#2777 opened Jul 6, 2023 by atongsa Loading…
3 tasks
1
5
Add doc example of creating a matrix of all pairwise comparisons
#2776 opened Jul 5, 2023 by hyanwong Loading… Python 0.5.10
3
Generic iterator class for trees and variants
#2762 opened Jun 13, 2023 by hyanwong • Draft
2 of 3 tasks
1
1
add modular simplifier
#2752 opened May 8, 2023 by molpopgen • Draft
3 tasks
13
Multichrom example
#2665 opened Dec 15, 2022 by jeromekelleher Loading… C API 1.1.2
28
Add states() method to return actual genotype states as characters
#2617 opened Oct 30, 2022 by hyanwong Loading…
3 tasks done
18
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