team-leaders-2022

A repository to share resources and a readiness checklist with team leaders for Hackin' Omics 2022.

Welcome

We'd like to welcome you to Hackin' Omics 2022! We hope you are as excited as we are to have an event focused on building community, increasing technical literacy, and solving scientific problems.

Readiness Checklist

• Log in to slack and introduce yourself.
• Sign up for a GitHub account if you don't have one.
• Fork this repository.
• Review the CODE_OF_CONDUCT
• Review some of the helpful resources we listed in the resources README.
  • Review what it takes to be a good team leader.
  • Ensure your team members are on slack and be sure to introduce yourself and the project.
  • Remember to discuss authorship and responsibilities up front as some projects may result in publications.
• Create a GitHub repository on our U-BRITE organization (not on your GitHub profile).
  • Use the "team-repo" template and update with your team's information.
  • Your repository should be PUBLIC.
  • Refine your project proposal based on the feedback given (if there was feedback).
  • Add your team members to the U-BRITE organization if they have a GitHub account or have them create an account.
• Watch recordings of workshops to become ready for the hackathon.
  • Computing Resources Workshop: An Introduction to Jetstream2, HPC, and Git/GitHub by Dr. Blake Joyce
  • U-BRITE Bootcamp: Learn how to use PAGER & SEAS for multi-omics downstream analysis by Dr. Jake Chen
• Ensure any datasets that need to be dowloaded have been mentioned by communicating with Zhandos Sembay via slack (His slack is @Zhandos Sembay or tagging the technical committee on GitHub using @u-brite/technical-committee.
  • Submit this form to submit any datasets or tools you'll be using throughtout the hackathon.
• Determine if you’ll need cloud (Jetstream2) or HPC computing (Cheaha) for the hackathon. Contact Blake Joyce in slack to discuss your team’s needs or discuss in the #team-leaders channel on slack.
  • If you want access to cloud (Jetstream2 - free cloud option):
    • Please create an XSEDE account.
    • Have your team members create an XSEDE account.
    • Gather your and all your team members’ XSEDE accounts and email to Blake Joyce in a single list.
  • If you want access to Cheaha high performance computing:
    • If you have a BlazerID or UAB XIAS account: go to https://rc.uab.edu/ and sign up.
    • If you are not at UAB or do not have a XIAS account already: slack message @Blake Joyce (UAB Research Computing) with your .edu email or your company email. We cannot accept personal emails for Cheaha access.
• Complete the above tasks and add your name and project name to the Team Leader Readiness table. Submit a pull request and assign @u-brite/hackin-omics-co-chairs.

Help

If you need help, please view the discussions tab on this repository or make an issue.

Team Leader Readiness

Team Leader	Team Name	Completed Checklist (yes or no)
Tarun Mamidi	canAI	Yes
Rahul Sharma	MedvAIsor	Yes
Arun Boddapati	Team Vecna-scDehasheR	Yes
Pradeep Varathan	Team AD Guy	Yes
Anton Orlichenko	ImageNomeR	Yes
Akhil Pampana	HeriVar	Yes
Emily Page	ReproCanAtlas	Yes
Vasileios Alevios	Papaki	Yes
Shaurita Hutchins	SNVariome	Yes.