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PCA CV step uses all processes regardless of the parameter settings #9

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cflerin opened this issue Apr 8, 2020 · 0 comments · Fixed by vib-singlecell-nf/vsn-pipelines#213 or #12
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cflerin commented Apr 8, 2020

In the config file, setting the nCores parameter has no effect on how many processes are used. It always uses all processes available.

pcacv {
   container = 'vibsinglecellnf/pcacv:0.1.0'
   find_optimal_npcs {
      accessor = '@assays$RNA@scale.data'
      nCores = 20
   }
}

The R script has a default value of 1 process, but this doesn't seem to be used either.

@cflerin cflerin added the bug Something isn't working label Apr 8, 2020
@dweemx dweemx self-assigned this May 13, 2020
dweemx added a commit that referenced this issue May 13, 2020
This was referenced May 14, 2020
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