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This repository has been archived by the owner on Apr 19, 2023. It is now read-only.

Feature/255 reformat popscle inputs #256

Merged
merged 4 commits into from
Dec 1, 2020
Merged

Feature/255 reformat popscle inputs #256

merged 4 commits into from
Dec 1, 2020

Commits on Nov 19, 2020

  1. Allow generic inputs for demuxlet/freemuxlet 

    - Remove popscle.nf from main repo workflows. The freemuxlet/demuxlet
workflows in the popscle repo are now called directly.
- Change freemuxlet/demuxlet references in main.nf to point to the
popscle repor workflows, and to use the
cellranger_dataChannel_to_bam_barcodes function to format the input data
channel.
    @cflerin
    cflerin committed Nov 19, 2020
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  2. Link popscle submodule with reworked workflow 

    - Resolves #255
    @cflerin
    cflerin committed Nov 19, 2020
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Commits on Nov 20, 2020

  1. Relink popscle submodule 

    - Include fix to properly resolve files from the cellranger path
    @cflerin
    cflerin committed Nov 20, 2020
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Commits on Nov 27, 2020

  1. Cleanup naming of cellranger to popscle translation workflow

    @cflerin
    cflerin committed Nov 27, 2020
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