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maybe fix test by pinning seaborn version
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wdecoster committed Sep 5, 2023
1 parent 3c45efb commit b2b23c5
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions scripts/test.sh
Original file line number Diff line number Diff line change
Expand Up @@ -26,9 +26,9 @@ echo "testing fastq plain:"
NanoPlot --fastq nanotest/reads.fastq.gz --verbose --minqual 4 --color red -o tests
echo "testing fasta:"
NanoPlot --fasta nanotest/reads.fa.gz --verbose --maxlength 35000 -o tests
pip install matplotlib
pip install seaborn
echo "testing legacy with summary:"
echo "installing matplotlib and seaborn"
pip install seaborn==0.10.1
NanoPlot --summary nanotest/sequencing_summary.txt --loglength --verbose -o tests --legacy hex --raw -p prefix --plots dot
echo "testing legacy with multiple output formats:"
NanoPlot --summary nanotest/sequencing_summary.txt --loglength --verbose -o tests --legacy hex --raw -p prefix --plots dot --format pdf png jpeg
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