Contents overview current as of 2022-04-28, commit id b066d83.
- root
- ICD code groupers (dizzy, headache, stroke-risk, stroke)
- medication groupers
- AIM2/
- "Original" classifier ipynb? Applies sklearn to SPADE data.
- Some old scripts to generate fake data.
- Mostly from late 2020.
- AndyZimolzak/
- ipynb, SQL, and RPT files serving as an intro to structured data
- SQL and TXT files related to note titles (AMA, discharge, and in general)
- slightly modified classifier.ipynb
- TXT file listing conda packages
- python helper functions and tests
- Graphviz file of PERT diagram of onboarding
- ipynb to inspect a few UMAP'd discharge summaries from Max
- LaTeX notation about discharge summary embeddings
- Justin/
- The things we use the most are in the Stroke_Notes_13OCT21 folder.
- cui semi-manual filtering ipynb
- word2vec ipynb (pytorch)
- UMAP "octopus" 1Hot ipynb
- UMAP "whale" CUIDocumentVectors.ipynb
- CSV of discharge summ note titles, adjudicated by Andy
- TXTs of 140 note types, 90 disch note titles
- Li/
- ipynb about comorbidity index
- SQL for SPADE data?
- Maxxxx/
- ipynb continuing Justin's UMAP of CUIs. Outlier disch summaries.
- UMAP of structured "B00" data
- Paarth/
- ipynb to input CSV, output SQL
- SQL with ICD groupers, SPADE-related
Note: the SPADE comorbidity index is calculated using SQL code from a different
repo.
Two files named proto_sf_calc_elix.sql and table_sf_calc_elix.sql.
git bundle create your-filename.bundle HEAD main