Reenable salmon tests

[kurtwheeler]

Issue Number

#1293

Purpose/Implementation Notes

In #1293 we upgraded the version of salmon. We wanted to run a staging test to get enough data to be able to verify that the new version was good. However, the transcriptome indices we use in our tests were built with the old salmon version, so we disabled the salmon tests temporarily. The new version ended up being fine, but we forgot to reenable the salmon tests.

When I was trying to reenable the salmon tests I couldn't get the reference files to work, but then I looked at them and they only had 16 genes so I just replaced them with new files created by running the tests.

Types of changes

• Bugfix (non-breaking change which fixes an issue)

Functional tests

The tests work again I think!!!

Checklist

• Lint and unit tests pass locally with my changes
• I have added tests that prove my fix is effective or that my feature works
• I have added necessary documentation (if appropriate)
• Any dependent changes have been merged and published in downstream modules