Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Reenable salmon tests #1366

Merged
merged 6 commits into from
Jul 2, 2019
Merged

Reenable salmon tests #1366

merged 6 commits into from
Jul 2, 2019

Commits on Jul 1, 2019

  1. Uses a transcriptome index build using salmon v13 for salmon tests an… 

    …d reenables them.
    @kurtwheeler
    kurtwheeler committed Jul 1, 2019
    Configuration menu
    Copy the full SHA
    db6baa3 View commit details
    Browse the repository at this point in the history

Commits on Jul 2, 2019

  1. Fix salmon test data which involves updating the salmon test data in S3.

    @kurtwheeler
    kurtwheeler committed Jul 2, 2019
    Configuration menu
    Copy the full SHA
    1c81ea5 View commit details
    Browse the repository at this point in the history

  2. Make txindex errors from salmon an exception and fix a wget command t… 

    …o download salmon test data correctly.
    @kurtwheeler
    kurtwheeler committed Jul 2, 2019
    Configuration menu
    Copy the full SHA
    3c1304d View commit details
    Browse the repository at this point in the history

  3. Move data for salmon tests that is in git repo out of salmon_tests so… 

    … that can just be for data from S3.
    @kurtwheeler
    kurtwheeler committed Jul 2, 2019
    Configuration menu
    Copy the full SHA
    250e299 View commit details
    Browse the repository at this point in the history

  4. Fix s3 data cleanup for salmon tests.

    @kurtwheeler
    kurtwheeler committed Jul 2, 2019
    Configuration menu
    Copy the full SHA
    6041acf View commit details
    Browse the repository at this point in the history

  5. Fix salmon tests to use simplified test data paths.

    @kurtwheeler
    kurtwheeler committed Jul 2, 2019
    Configuration menu
    Copy the full SHA
    e6a5849 View commit details
    Browse the repository at this point in the history