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Java EE 8 Upgrade #4260

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matthew-a-dunlap opened this issue Nov 3, 2017 · 9 comments · Fixed by #6818
Closed

Java EE 8 Upgrade #4260

matthew-a-dunlap opened this issue Nov 3, 2017 · 9 comments · Fixed by #6818
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Component: Code Infrastructure formerly "Feature: Code Infrastructure"

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@matthew-a-dunlap
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At some point we should upgrade to Java EE 8 to gain the power of new java technology and remain secure.

Outcome of the #4217 spike.
@matthew-a-dunlap
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[Info from #4217]

Java EE 8: Unsure, blocked by errors still present in Glassfish 5, also facing a number of issues on its own or ones compounded with Glassfish 5.

  • Depricated api errors when building, but build does work
  • Not supported by Netbeans yet, had to manually switch over Java EE 8 libraries. Different errors have come forth when enabling different Java EE 8 libraries, referred to https://stackoverflow.com/questions/45852077/netbeans-how-to-add-a-javaee-version and http://www.oracle.com/webfolder/technetwork/jsc/xml/ns/javaee/index.html#8
  • Error with all enabled: On launch I get the error below. I could try adding and removing parts of Java EE 8 to see what other errors are there but I'm not sure its worth the work. This is especially true because I can't make it much farther as there are Glassfish 5 errors that I cannot pass.
    /dataverse.xhtml @20,83 value="#{DataversePage.dataverse.id}": Target Unreachable, identifier 'DataversePage' resolved to null javax.el.PropertyNotFoundException: /dataverse.xhtml @20,83 value="#{DataversePage.dataverse.id}": Target Unreachable, identifier 'DataversePage' resolved to null
  • Error with EE 8 core & servlet 4.0:
Version:1.0 StartHTML:0000000100 EndHTML:0000010413 StartFragment:0000000100 EndFragment:0000010413 [2017-10-31T15:44:54.805-0400] [glassfish 5.0] [WARNING] [] [javax.enterprise.resource.webcontainer.jsf.lifecycle] [tid: _ThreadID=31 _ThreadName=http-listener-1(5)] [timeMillis: 1509479094
805] [levelValue: 900] [[ /dataverse.xhtml @20,83 value="#{DataversePage.dataverse.id}": Target Unreachable, identifier 'DataversePage' resolved to null javax.el.PropertyNotFoundException: /dataverse.xhtml @20,83 value="#{DataversePage.dataverse.id}": Target Unreachable, identifier 'DataversePage' resolved to null
  • Error with EE 8 core & JSF 2.3:
Version:1.0 StartHTML:0000000100 EndHTML:0000009302 StartFragment:0000000100 EndFragment:0000009302 java.lang.NullPointerException
       at edu.harvard.iq.dataverse.ControlledVocabularyValueConverter.getAsObject(ControlledVocabularyValueConverter.java:29)
       at com.sun.faces.renderkit.html_basic.MenuRenderer.convertSelectManyValuesForCollection(MenuRenderer.java:457)
       at com.sun.faces.renderkit.html_basic.MenuRenderer.convertSelectManyValuesForModel(MenuRenderer.java:333)
       at com.sun.faces.renderkit.html_basic.MenuRenderer.convertSelectManyValue(MenuRenderer.java:133)
       at com.sun.faces.renderkit.html_basic.MenuRenderer.getConvertedValue(MenuRenderer.java:305)
  • Error with EE 8 core only:
Version:1.0 StartHTML:0000000100 EndHTML:0000009302 StartFragment:0000000100 EndFragment:0000009302 java.lang.NullPointerException
       at edu.harvard.iq.dataverse.ControlledVocabularyValueConverter.getAsObject(ControlledVocabularyValueConverter.java:29)
       at com.sun.faces.renderkit.html_basic.MenuRenderer.convertSelectManyValuesForCollection(MenuRenderer.java:457)
       at com.sun.faces.renderkit.html_basic.MenuRenderer.convertSelectManyValuesForModel(MenuRenderer.java:333)
       at com.sun.faces.renderkit.html_basic.MenuRenderer.convertSelectManyValue(MenuRenderer.java:133)
       at com.sun.faces.renderkit.html_basic.MenuRenderer.getConvertedValue(MenuRenderer.java:305)
       at org.primefaces.component.selectmanycheckbox.SelectManyCheckboxRenderer.getConvertedValue(SelectManyCheckboxRenderer.java:40)
...

This is as far as I went, I need a better understanding of which resources we need to upgrade. I can try to fix these first lines of issues and push forward but its hard for me to tell if issues from Glassfish 5 could also be @ play.

@djbrooke djbrooke mentioned this issue Nov 3, 2017
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@pdurbin pdurbin added the Component: Code Infrastructure formerly "Feature: Code Infrastructure" label Oct 13, 2018
@poikilotherm
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Note: the dependency on Google Gson and Jackson within the Dataverse codebase should be avoiding when upgrading to EE 8, as JSON data binding is part of the standard now.

poikilotherm added a commit to poikilotherm/dataverse that referenced this issue Nov 7, 2018
@poikilotherm
Add direct dependency to Jackson JSON-B and JSON-P in pom.xml.
c397328 
Needed because the transitive dependency from AWS has been used before.
Thus this relates to IQSS#5274. As best practise, code should not rely on
those deps but add a direct dependency.

For the sake of working on IQSS#4260 (Java EE 8) at some point in the future, please
remember to refactor the code using Jackson (and Gson) and remove it
in favor of Java EE 8 native JSON-B and JSON-P support.
@poikilotherm poikilotherm mentioned this issue Nov 7, 2018
Closed
13 tasks
poikilotherm added a commit to poikilotherm/dataverse that referenced this issue Nov 7, 2018
@poikilotherm
Add direct dependency to Jackson JSON-B and JSON-P in pom.xml.
b52425b 
Needed because the transitive dependency from AWS has been used before.
Thus this relates to IQSS#5274. As best practise, code should not rely on
those deps but add a direct dependency.

For the sake of working on IQSS#4260 (Java EE 8) at some point in the future, please
remember to refactor the code using Jackson (and Gson) and remove it
in favor of Java EE 8 native JSON-B and JSON-P support.
poikilotherm added a commit to poikilotherm/dataverse that referenced this issue Nov 14, 2018
@poikilotherm
Add direct dependency to Jackson JSON-B and JSON-P in pom.xml.
fdd11aa 
Needed because the transitive dependency from AWS has been used before.
Thus this relates to IQSS#5274. As best practise, code should not rely on
those deps but add a direct dependency.

For the sake of working on IQSS#4260 (Java EE 8) at some point in the future, please
remember to refactor the code using Jackson (and Gson) and remove it
in favor of Java EE 8 native JSON-B and JSON-P support.
poikilotherm added a commit to poikilotherm/dataverse that referenced this issue Nov 14, 2018
@poikilotherm
Add direct dependency to Jackson JSON-B and JSON-P in pom.xml.
603d506 
Needed because the transitive dependency from AWS has been used before.
Thus this relates to IQSS#5274. As best practise, code should not rely on
those deps but add a direct dependency.

For the sake of working on IQSS#4260 (Java EE 8) at some point in the future, please
remember to refactor the code using Jackson (and Gson) and remove it
in favor of Java EE 8 native JSON-B and JSON-P support.
poikilotherm added a commit to poikilotherm/dataverse that referenced this issue Nov 15, 2018
@poikilotherm
Add direct dependency to Jackson JSON-B and JSON-P in pom.xml.
f1dcbd8 
Needed because the transitive dependency from AWS has been used before.
Thus this relates to IQSS#5274. As best practise, code should not rely on
those deps but add a direct dependency.

For the sake of working on IQSS#4260 (Java EE 8) at some point in the future, please
remember to refactor the code using Jackson (and Gson) and remove it
in favor of Java EE 8 native JSON-B and JSON-P support.
poikilotherm added a commit to poikilotherm/dataverse that referenced this issue Nov 21, 2018
@poikilotherm
Add direct dependency to Jackson JSON-B and JSON-P in pom.xml.
2577bdd 
Needed because the transitive dependency from AWS has been used before.
Thus this relates to IQSS#5274. As best practise, code should not rely on
those deps but add a direct dependency.

For the sake of working on IQSS#4260 (Java EE 8) at some point in the future, please
remember to refactor the code using Jackson (and Gson) and remove it
in favor of Java EE 8 native JSON-B and JSON-P support.
poikilotherm added a commit to poikilotherm/dataverse that referenced this issue Nov 21, 2018
@poikilotherm
Add direct dependency to Jackson JSON-B and JSON-P in pom.xml.
85d6832 
Needed because the transitive dependency from AWS has been used before.
Thus this relates to IQSS#5274. As best practise, code should not rely on
those deps but add a direct dependency.

For the sake of working on IQSS#4260 (Java EE 8) at some point in the future, please
remember to refactor the code using Jackson (and Gson) and remove it
in favor of Java EE 8 native JSON-B and JSON-P support.
poikilotherm added a commit to poikilotherm/dataverse that referenced this issue Nov 21, 2018
@poikilotherm
Add direct dependency to Jackson JSON-B and JSON-P in pom.xml.
6cdb756 
Needed because the transitive dependency from AWS has been used before.
Thus this relates to IQSS#5274. As best practise, code should not rely on
those deps but add a direct dependency.

For the sake of working on IQSS#4260 (Java EE 8) at some point in the future, please
remember to refactor the code using Jackson (and Gson) and remove it
in favor of Java EE 8 native JSON-B and JSON-P support.
poikilotherm added a commit to poikilotherm/dataverse that referenced this issue Nov 21, 2018
@poikilotherm
Add direct dependency to Jackson JSON-B and JSON-P in pom.xml.
958adde 
Needed because the transitive dependency from AWS has been used before.
Thus this relates to IQSS#5274. As best practise, code should not rely on
those deps but add a direct dependency.

For the sake of working on IQSS#4260 (Java EE 8) at some point in the future, please
remember to refactor the code using Jackson (and Gson) and remove it
in favor of Java EE 8 native JSON-B and JSON-P support.
poikilotherm added a commit to poikilotherm/dataverse that referenced this issue Nov 29, 2018
@poikilotherm
Add direct dependency to Jackson JSON-B and JSON-P in pom.xml.
f6b39ce 
Needed because the transitive dependency from AWS has been used before.
Thus this relates to IQSS#5274. As best practise, code should not rely on
those deps but add a direct dependency.

For the sake of working on IQSS#4260 (Java EE 8) at some point in the future, please
remember to refactor the code using Jackson (and Gson) and remove it
in favor of Java EE 8 native JSON-B and JSON-P support.
@poikilotherm
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Bad news on Jakarta EE and the future. https://eclipse-foundation.blog/2019/05/03/jakarta-ee-java-trademarks/

There is some hope for backward compatibility via application server bytecode manipulation, see https://www.tomitribe.com/blog/jakarta-ee-a-new-hope

Time to get #4172 solved, right?

@pdurbin
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pdurbin commented May 6, 2019 •
edited
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@poikilotherm I thought maybe you'd say we should take a closer look at your MicroProfile idea in #5187 😄

I heard the Jakarta EE news in the #faif channel on freenode over the weekend. That's the Free as in Freedom podcast. The first link I saw ends with "This is the day when Java EE was killed by Oracle." https://headcrashing.wordpress.com/2019/05/03/negotiations-failed-how-oracle-killed-java-ee/ . Next I read the board minutes: https://www.eclipse.org/org/foundation/boardminutes/2019_03_26_Minutes.pdf . There are tons of links and blog posts out there...

... and probably more since I last checked.

One thing that caught my eye is that in two days on May 8th, there will be a "Jakarta EE Community Hangout" where all of this will be discussed. The agenda/minutes doc is here: https://docs.google.com/document/d/1TH_p_m-z3v9HZyhgwW41JzXWTFIwrClGLaSDIy0Sf5w/edit?usp=sharing

The summary from that doc is this:

Eclipse Foundation Director, quote: "Eclipse and Oracle have agreed that the javax package namespace cannot be evolved by the Jakarta EE community. As well, Java trademarks such as the existing specification names cannot be used by Jakarta EE specifications."

@mheppler
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mheppler commented Jun 26, 2019 •
edited
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Looking over the PrimeFaces Migration Guide while creating the Upgrade to PrimeFaces 7 #5975 issue, I noticed this related nugget of information.

7.0 to 7.1

  • PrimeFaces is now only compatible with Java8+

@pdurbin
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pdurbin commented Jun 27, 2019

PrimeFaces is now only compatible with Java8+

That's fine. We already moved from Java 7 to Java 8. But thanks for the heads up.

I just learned that there's a beta of Netbeans (Apache NetBeans 11.1-beta2) that supports Java EE 8: http://mail-archives.apache.org/mod_mbox/netbeans-users/201906.mbox/%3CCACkjAxQ7FYu8xF6qO29XZdXzatNWC%3D1vz_gpWXZ7GO9Zusy28g%40mail.gmail.com%3E

@mheppler
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🤦

poikilotherm added a commit to poikilotherm/dataverse that referenced this issue Aug 1, 2019
@poikilotherm
Need to revert the usage of streams, as EclipseLink 2.5 is broken.
b0d9c66 
See https://bugs.eclipse.org/bugs/show_bug.cgi?id=429992

As we are stuck on Glassfish 4.1 for now (see IQSS#4172, IQSS#4248 and IQSS#4260),
we cannot simply upgrade. Meh.

This reverts commit c80aeea.
@poikilotherm
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With the move to Payara 5 in #6230, we are moving to a Java / Jakarta EE 8 certified platform 🥳 .

While talking about #6694, @scolapasta expressed his preference for using a standardized API for JSON Data Binding instead of relying on Jackson or similar and getting to use modern tech.
As JSON-B is part of EE 8 only, upgrading will be a necessity for Dataverse 5.

As the dust settled around the Jakarta EE move, IMHO we should move to Jakarta EE 8, not Java EE 8. There is no technical difference between both (see https://jakarta.ee/specifications/platform/8/platform-spec-8.pdf#changes-in-jakarta-ee-8), but it makes Dataverse look much younger... 😉

@poikilotherm poikilotherm mentioned this issue Apr 10, 2020
Closed
poikilotherm added a commit to poikilotherm/dataverse that referenced this issue Apr 14, 2020
@poikilotherm
Upgrade to Jakarta EE 8, including Mojarra (JSF) 2.3 dependency upgra…
1243916 
…de. IQSS#4260
@poikilotherm poikilotherm mentioned this issue Apr 14, 2020
Merged
poikilotherm added a commit to poikilotherm/dataverse that referenced this issue Apr 17, 2020
@poikilotherm
Refactor deprecated javax.faces.bean usages. IQSS#4260
c0d24b0
pdurbin added a commit to poikilotherm/dataverse that referenced this issue Apr 22, 2020
@pdurbin
Merge branch 'develop' into 4260-jakarta IQSS#4260
ac212af 
We especially want to pick up the bug fix in pull request IQSS#6828.
pdurbin added a commit that referenced this issue Apr 22, 2020
@pdurbin
update Java EE to Jakarta EE #6593 #4260
9337c2b
@poikilotherm
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🥳🎉🎊🍾

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4260 jakarta poikilotherm/dataverse
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@pdurbin @mheppler @poikilotherm @djbrooke @matthew-a-dunlap