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Make PFDA vignette not stop on error #21

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Make PFDA vignette not stop on error #21

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1d8ed6b
Make PFDA vignette not stop on error
MiguelRodo Mar 17, 2022
35f6577
Merge branch 'RGLab:master' into master
MiguelRodo Jun 8, 2022
f32a65a
Fix modVals logical comparison length bug
MiguelRodo Sep 15, 2023
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2 changes: 1 addition & 1 deletion R/reconcileAnnotationBoundaries.R
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Original file line number Diff line number Diff line change
Expand Up @@ -193,7 +193,7 @@
naNames <- names(which(is.na(resListUpdate)))
for (changeName in naNames) {
modVals <- gateList[[changeName]][[channel]]
if (!is.na(modVals)) {
if (any(!is.na(modVals))) {
#there is empirical data for an experimental unit, so attempt to use it.
#this can arise if the "Preference" setting of supervision leads to using
#a gateNumber that is absent from a level of the imputation hierarchy.
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3 changes: 2 additions & 1 deletion vignettes/faustPFDA.Rmd
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Expand Up @@ -12,7 +12,8 @@ vignette: >
```{r setup, include = FALSE}
knitr::opts_chunk$set(
comment = "#>",
dpi = 300
dpi = 300,
error = TRUE
)
```

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