bio4j-titan v0.4.0

This version is based on the Bio4j v0.12 and includes an important fix to the NCBITaxonomy model. See the bio4j/bio4j-0.12.0 release notes for details.

bio4j-titan v0.4.0-RC3

This version is a release candidate for 0.4.0, which will be the base for bio4j 1.0.

The only change is update to the titan-0.5.4. The storage format is claimed to be compatible with 0.5.2.

bio4j-titan v0.4.0-RC2

This version is a release candidate for 0.4.0, which will be the base for bio4j 1.0.

The only change is update to the bio4j/bio4j v0.12.0-RC3.

bio4j-titan v0.4.0-RC1

This version is a release candidate for 0.4.0, which will be the base for bio4j 1.0. Further changes will only be bug fixes or documentation improvements.

This codebase was used for a full import which is available from S3 in a requester-pays bucket.

bio4j-titandb v0.3.1

Upgraded to bio4j-model v0.3.2 with important fix for relationships names collision

bio4j-titandb v0.3.0

• Added some relationship types definitions;
• Fixed setters/getters for gi ids and old tax ids;
• Defined necessary taxonomy keys in InitBio4j;
• Improved taxonomy importing (batch-loading);
• Changed implementation of GI-related importing programs;
• Fixed package tree plus added new class wrapper NCBITAxonNode;
• Removed wrong package tree;
• Made GI ids and old tax ids multiple-value properties

bio4j-titandb v0.2.0

• Updated to bio4j-model v0.3.0 with ohnosequences package
• Updated to bio4j-utils v1.3.0
• Updated to titan v0.4.1
• Fixed fat jar assembly