Develop #1049
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Develop #1049
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* Added dataRange to computeMatricOperation to return min,max,median and 10th and 90th percentile. * fixed pep8 * more pep8 fix * fixed test_sieve of azure tests * one more fix for test_sieve * imported pysam to test_readFiltering.py * updated hash values for test_sieve * fixed galaxy computeMatrixOperation.xml * More fixes for galaxy wrapper
…e with running plotheatmap on it again (#968)
* Now colors can be set by user for any heatmap in plotProfile. A bug in tick index for plotting heatmap is also fixed. * added a small description * pep8 fix
* fix #969 * PEP8 * updated changes.txt * fixed a little bug in parseCommon.py which caused flake8 failure. * [WIP] added auto to plotheatmap #908 (#982) * added auto to plotheatmap * fixed lint, added warning message, updated the help for zmin, zmax * galaxy test plotPCA * lower down the delat for potPCA galaxy test Co-authored-by: Leily Rabbani <rabbani@pc390.ie-freiburg.mpg.de> * updated version and changes * removed alpha from plotPCA test * removed compare="sim_size" Co-authored-by: Devon Ryan <devon.ryan@genedata.com> Co-authored-by: Leily Rabbani <rabbani@pc390.ie-freiburg.mpg.de> Co-authored-by: LeilyR <leila.rabbani@gmail.com>
… anitizer for the 2 new params.
Added sortUsingSamples and clusterUsingSamples to the galaxy wrapper
* updated cmp usage to fit the recent mpl updates. * updated the requirements.txt
* change "NA" occurences in plotFingerprint.py to proper numpy.NAN * update expected plotFingerprint output in galaxy from NA to nan
fixed xml error brought up in 1003
changed auto to best
This reverts commit 7811ae7.
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Hi @dpryan79 I am about to merge this PR and tag a new release. Just wanted to check with you, if yuo have anything to be added/changed. |
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@LeilyR Nope, go for it |
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