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New shortcut/chain relations linking continuants to downstream occurr…
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…ents. Fixes #123

gitowl
gitowl ||  Diffing:  src/ontology/ro-edit.owl
gitowl ||
gitowl ||  subject: http://purl.obolibrary.org/obo/RO_0002263
gitowl ++  SubObjectPropertyOf(obo:RO_0002263 obo:RO_0002500)
gitowl ||      acts upstream of SubPropertyOf causal agent in
gitowl ++  AnnotationAssertion(rdfs:label obo:RO_0002263 "acts upstream of")
gitowl ||      <http://purl.obolibrary.org/obo/RO_0002263> label "acts upstream of"
gitowl ++  Declaration(ObjectProperty(obo:RO_0002263))
gitowl ||      ObjectProperty: acts upstream of
gitowl ++  AnnotationAssertion(obo:IAO_0000115 obo:RO_0002263 "c involved in regulation of p if c enables  'p' and p' causally upstream of p")
gitowl ||      <http://purl.obolibrary.org/obo/RO_0002263> IAO_0000115 "c involved in regulation of p if c enables  'p' and p' causally upstream of p"
gitowl ||
gitowl ||  subject: http://purl.obolibrary.org/obo/RO_0002264
gitowl ++  Declaration(ObjectProperty(obo:RO_0002264))
gitowl ||      ObjectProperty: acts upstream of or within
gitowl ++  AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:RO_0002264 "affects")
gitowl ||      <http://purl.obolibrary.org/obo/RO_0002264> hasRelatedSynonym "affects"
gitowl ++  SubObjectPropertyOf(obo:RO_0002264 obo:RO_0002500)
gitowl ||      acts upstream of or within SubPropertyOf causal agent in
gitowl ++  AnnotationAssertion(rdfs:label obo:RO_0002264 "acts upstream of or within")
gitowl ||      <http://purl.obolibrary.org/obo/RO_0002264> label "acts upstream of or within"
gitowl ++  AnnotationAssertion(obo:IAO_0000115 obo:RO_0002264 "c acts upstream of or within p if c is enables 'p' and p' causally upstream of or within p")
gitowl ||      <http://purl.obolibrary.org/obo/RO_0002264> IAO_0000115 "c acts upstream of or within p if c is enables 'p' and p' causally upstream of or within p"
gitowl ||
gitowl ||  subject: http://purl.obolibrary.org/obo/RO_0002431
gitowl --  AnnotationAssertion(rdfs:label obo:RO_0002431 "involved in or regulates")
gitowl ||      <http://purl.obolibrary.org/obo/RO_0002431> label "involved in or regulates"
gitowl --  AnnotationAssertion(obo:IAO_0000118 obo:RO_0002431 "involved in or involved in regulation of")
gitowl ||      <http://purl.obolibrary.org/obo/RO_0002431> IAO_0000118 "involved in or involved in regulation of"
gitowl ++  AnnotationAssertion(rdfs:label obo:RO_0002431 "involved in or involved in regulation of")
gitowl ||      <http://purl.obolibrary.org/obo/RO_0002431> label "involved in or involved in regulation of"
gitowl ++  AnnotationAssertion(obo:IAO_0000118 obo:RO_0002431 "involved in or reguates")
gitowl ||      <http://purl.obolibrary.org/obo/RO_0002431> IAO_0000118 "involved in or reguates"
gitowl ||
gitowl ||  subject: NO_SUBJECT
gitowl ++  SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002327 obo:RO_0002418) obo:RO_0002264)
gitowl ||      enables o causally upstream of or within SubPropertyOf acts upstream of or within
gitowl ++  SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0002327 obo:RO_0002411) obo:RO_0002263)
gitowl ||      enables o causally upstream of SubPropertyOf acts upstream of
gitowl
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@cmungall
cmungall committed Sep 2, 2016
1 parent b141c2a commit 8a05c3b
Showing 1 changed file with 40 additions and 11 deletions.
51 changes: 40 additions & 11 deletions src/ontology/ro-edit.owl
View file
Original file line number Diff line number Diff line change
Expand Up @@ -45,9 +45,7 @@

<!-- http://purl.obolibrary.org/obo/BFO_0000063 -->

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000063">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002222"/>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000063"/>



Expand Down Expand Up @@ -167,12 +165,7 @@

<!-- http://purl.obolibrary.org/obo/RO_0002222 -->

<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002222">
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000232>Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends.</obo:IAO_0000232>
<dc:source rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1</dc:source>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
</owl:AnnotationProperty>
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002222"/>



Expand Down Expand Up @@ -743,6 +736,7 @@ Where we have an annotation assertion
<!-- http://purl.obolibrary.org/obo/BFO_0000063 -->

<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000063">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002222"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000063"/>
Expand Down Expand Up @@ -2974,6 +2968,35 @@ Expands_to: T has_fasciculating_neuron_projection that synapse_in some R.</obo:I



<!-- http://purl.obolibrary.org/obo/RO_0002263 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002263">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002500"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002327"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002411"/>
</owl:propertyChainAxiom>
<obo:IAO_0000115>c involved in regulation of p if c enables &apos;p&apos; and p&apos; causally upstream of p</obo:IAO_0000115>
<rdfs:label>acts upstream of</rdfs:label>
</owl:ObjectProperty>



<!-- http://purl.obolibrary.org/obo/RO_0002264 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002264">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002500"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002327"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002418"/>
</owl:propertyChainAxiom>
<obo:IAO_0000115>c acts upstream of or within p if c is enables &apos;p&apos; and p&apos; causally upstream of or within p</obo:IAO_0000115>
<oboInOwl:hasRelatedSynonym>affects</oboInOwl:hasRelatedSynonym>
<rdfs:label>acts upstream of or within</rdfs:label>
</owl:ObjectProperty>



<!-- http://purl.obolibrary.org/obo/RO_0002285 -->

<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002285">
Expand Down Expand Up @@ -4434,8 +4457,8 @@ Each of these 3 primitives can be composed to yield a cross-product of different
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002500"/>
<obo:IAO_0000115>c involved in or regulates p if and only if either (i) c is involved in p or (ii) c is involved in regulation of p</obo:IAO_0000115>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<obo:IAO_0000118>involved in or involved in regulation of</obo:IAO_0000118>
<rdfs:label>involved in or regulates</rdfs:label>
<obo:IAO_0000118>involved in or reguates</obo:IAO_0000118>
<rdfs:label>involved in or involved in regulation of</rdfs:label>
</owl:ObjectProperty>


Expand Down Expand Up @@ -7429,6 +7452,12 @@ Environments include natural environments or exposures, experimentally applied c
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002093">
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
</rdf:Description>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/RO_0002222">
<obo:IAO_0000232>Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends.</obo:IAO_0000232>
<obo:IAO_0000117>Chris Mungall</obo:IAO_0000117>
<dc:source rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1</dc:source>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
</rdf:Description>
<rdf:Description rdf:about="http://www.w3.org/2000/01/rdf-schema#isDefinedBy">
<obo:IAO_0000589>is defined by</obo:IAO_0000589>
</rdf:Description>
Expand Down

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