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Relations used for formalising gene product annotation in GO #123

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dosumis opened this issue Sep 2, 2016 · 1 comment
Closed

Relations used for formalising gene product annotation in GO #123

dosumis opened this issue Sep 2, 2016 · 1 comment

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@dosumis
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dosumis commented Sep 2, 2016

We have:

image

involved in:
enables o 'part of' SubPropertyOf 'involved in'
'involved in' o 'part of' SubPropertyOf 'involved in'

involved in regulation of:
enables o regulates SubPropertyOf 'involved in regulation of'
'involved in' o regulates SubPropertyOf 'involved in regulation of'

The name of the parent class is misleading. It should probably be changed to 'involved in or involved in regulation of'

We also need new relations - chaining with causally upstream of:

acts upstream of:
enables o 'causally upstream of' SubPropertyOf 'acts upstream of'

effects*:
enables o 'causally upstream of or within' SubPropertyOf effects

This last relation is a superProperty for this whole heirarchy

* Not totally sure about this name. Other suggestion?
CC @ukemi @vanaukenk @cmungall
cmungall added a commit that referenced this issue Sep 2, 2016
@cmungall
New release
da40a60 
 - Removed OBO_REL:is_a from ro-chado. Fixes #115
 - New shortcut/chain relations linking continuants to downstream occurrents. Fixes #123
 - Added missing definitions
@dosumis
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dosumis commented Sep 2, 2016

More changes needed to hierarchy - should be:

image

dosumis added a commit that referenced this issue Sep 2, 2016
@dosumis
Fixed GO GP->GO term rel hierarchy #123
0afeeba
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@dosumis