feat: add tests for importing taxonomies

backend/Dockerfile

@@ -49,5 +49,7 @@ COPY parser /parser
 
 USER off:off
 COPY --chown=off:off ./backend/editor /code/editor
+COPY --chown=off:off ./backend/sample /code/sample
+RUN find /code/sample -type f -name '*.py' -exec chmod +x {} \;
 
 CMD ["uvicorn", "editor.api:app", "--host", "0.0.0.0", "--port", "80"]

backend/editor/api.py

@@ -398,7 +398,6 @@ async def upload_taxonomy(
     """
     Upload taxonomy file to be parsed
     """
-    # use the file name as the taxonomy name
     taxonomy = TaxonomyGraph(branch, taxonomy_name)
     if not taxonomy.is_valid_branch_name():
         raise HTTPException(status_code=422, detail="branch_name: Enter a valid branch name!")

backend/editor/entries.py

@@ -12,7 +12,7 @@
 from .exceptions import GithubBranchExistsError  # Custom exceptions
 from .exceptions import (
     GithubUploadError,
-    TaxnonomyImportError,
+    TaxonomyImportError,
     TaxonomyParsingError,
     TaxonomyUnparsingError,
 )
@@ -124,7 +124,7 @@ async def import_from_github(self, description):
 
             return status
         except Exception as e:
-            raise TaxnonomyImportError() from e
+            raise TaxonomyImportError() from e
 
     async def upload_taxonomy(self, filepath, description):
         """
@@ -136,7 +136,7 @@ async def upload_taxonomy(self, filepath, description):
                 await self.create_project(description)
             return status
         except Exception as e:
-            raise TaxnonomyImportError() from e
+            raise TaxonomyImportError() from e
 
     def dump_taxonomy(self):
         """
@@ -614,11 +614,11 @@ async def delete_taxonomy_project(self, branch, taxonomy_name):
         """
 
         delete_query = """
-            MATCH (n:PROJECT {taxonomy_name: $taxonomy_name, branch: $branch})
+            MATCH (n:PROJECT {taxonomy_name: $taxonomy_name, branch_name: $branch_name})
             DELETE n
         """
         result = await get_current_transaction().run(
-            delete_query, taxonomy_name=taxonomy_name, branch=branch
+            delete_query, taxonomy_name=taxonomy_name, branch_name=branch
         )
         summary = await result.consume()
         count = summary.counters.nodes_deleted

backend/editor/exceptions.py

@@ -23,7 +23,7 @@ def __init__(self):
         return super().__init__(exception_message)
 
 
-class TaxnonomyImportError(RuntimeError):
+class TaxonomyImportError(RuntimeError):
     """
     Raised when attempting to fetch a taxonomy from GitHub
     """

backend/editor/github_functions.py

@@ -3,8 +3,8 @@
 """
 from textwrap import dedent
 
+import github
 from fastapi import HTTPException
-from github import Github, GithubException
 
 from . import settings
 
@@ -33,7 +33,7 @@ def init_driver_and_repo(self):
             raise HTTPException(
                 status_code=400, detail="repo_uri is not set. Please add your access token in .env"
             )
-        github_driver = Github(access_token)
+        github_driver = github.Github(access_token)
         repo = github_driver.get_repo(repo_uri)
         return repo
 
@@ -72,7 +72,7 @@ def update_file(self, filename):
                 current_file.sha,
                 branch=self.branch_name,
             )
-        except GithubException as e:
+        except github.GithubException as e:
             # Handle GitHub API-related exceptions
             raise Exception(f"GitHub API error: {e}") from e
         except FileNotFoundError as e: