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Remove VCF docs and refer to bio2zarr and vcztools Build NumPy 2 #24: Commit eeef90b pushed by tomwhite
September 24, 2024 14:15 8m 51s remove-vcf
remove-vcf
September 24, 2024 14:15 8m 51s
Test on Python 3.12 Build NumPy 2 #23: Commit 21c4f6a pushed by tomwhite
September 24, 2024 10:56 1m 36s python-3.12
python-3.12
September 24, 2024 10:56 1m 36s
Use sgkit.distarray for gwas_linear_regression Build NumPy 2 #22: Commit 1de068b pushed by tomwhite
September 23, 2024 12:12 10m 58s dist-array-gwas
dist-array-gwas
September 23, 2024 12:12 10m 58s
Explicitly install Zarr main branch (v2) rather than the default (v3) Build NumPy 2 #21: Commit 195decc pushed by tomwhite
September 19, 2024 09:10 8m 40s upstream-build-fixes
upstream-build-fixes
September 19, 2024 09:10 8m 40s
Temp change to run on PR Build NumPy 2 #20: Commit 4e235f9 pushed by tomwhite
September 19, 2024 08:52 8m 38s upstream-build-fixes
upstream-build-fixes
September 19, 2024 08:52 8m 38s
Install dask[dataframe] explicitly to fix upstream error Build NumPy 2 #19: Commit c1e7e6e pushed by tomwhite
September 19, 2024 08:49 11m 27s upstream-build-fixes
upstream-build-fixes
September 19, 2024 08:49 11m 27s
Update changelog Build NumPy 2 #18: Commit f1fd955 pushed by tomwhite
September 17, 2024 13:47 8m 28s gwas-tutorial-vcf2zarr
gwas-tutorial-vcf2zarr
September 17, 2024 13:47 8m 28s
Use vcf2zarr in GWAS tutorial notebook Build NumPy 2 #17: Commit 7094d3c pushed by tomwhite
September 16, 2024 14:40 8m 58s gwas-tutorial-vcf2zarr
gwas-tutorial-vcf2zarr
September 16, 2024 14:40 8m 58s
Try %%bash for all commands Build NumPy 2 #16: Commit 21dc8ee pushed by tomwhite
September 16, 2024 14:33 8m 51s gwas-tutorial-vcf2zarr
gwas-tutorial-vcf2zarr
September 16, 2024 14:33 8m 51s
Try %%bash Build NumPy 2 #15: Commit 801f7cc pushed by tomwhite
September 16, 2024 14:05 8m 48s gwas-tutorial-vcf2zarr
gwas-tutorial-vcf2zarr
September 16, 2024 14:05 8m 48s
Temporarily disable some workflows while debugging Build NumPy 2 #14: Commit dddc908 pushed by tomwhite
September 16, 2024 13:55 8m 44s gwas-tutorial-vcf2zarr
gwas-tutorial-vcf2zarr
September 16, 2024 13:55 8m 44s
Add top-level astype function for Dask Build NumPy 2 #13: Commit 4588f19 pushed by tomwhite
September 16, 2024 13:05 8m 21s dist-array-sample-stats
dist-array-sample-stats
September 16, 2024 13:05 8m 21s
Add top-level astype function for Dask Build NumPy 2 #12: Commit 28edadb pushed by tomwhite
September 16, 2024 12:04 13m 37s dist-array-sample-stats
dist-array-sample-stats
September 16, 2024 12:04 13m 37s
Use sgkit.distarray for Hardy-Weinberg Equilibrium Build NumPy 2 #11: Commit e8a7890 pushed by tomwhite
September 16, 2024 11:44 15m 56s dist-array-sample-stats
dist-array-sample-stats
September 16, 2024 11:44 15m 56s
Build docs with Python 3.10 Build NumPy 2 #10: Commit 5c2f2a4 pushed by tomwhite
September 16, 2024 10:55 13m 5s gwas-tutorial-vcf2zarr
gwas-tutorial-vcf2zarr
September 16, 2024 10:55 13m 5s
Build docs with Python 3.10 Build NumPy 2 #9: Commit c3ffc22 pushed by tomwhite
September 16, 2024 10:46 13m 12s gwas-tutorial-vcf2zarr
gwas-tutorial-vcf2zarr
September 16, 2024 10:46 13m 12s
Use vcf2zarr in GWAS tutorial notebook Build NumPy 2 #8: Commit f5f96a7 pushed by tomwhite
September 16, 2024 10:13 15m 45s gwas-tutorial-vcf2zarr
gwas-tutorial-vcf2zarr
September 16, 2024 10:13 15m 45s
Update actions/upload-artifact to v4 in .github/workflows Build NumPy 2 #7: Commit fe588fb pushed by tomwhite
September 11, 2024 13:25 11m 11s fix-docs-build
fix-docs-build
September 11, 2024 13:25 11m 11s
Use sgkit.distarray for count_variant_alleles and variant_stats Build NumPy 2 #6: Commit ba39078 pushed by tomwhite
September 11, 2024 13:18 11m 29s dist-array-variant-stats
dist-array-variant-stats
September 11, 2024 13:18 11m 29s
Don't run NumPy 2 on Python 3.9 due to scikit-allel incompatibility Build NumPy 2 #5: Commit a47aa01 pushed by tomwhite
September 2, 2024 10:57 10m 45s numpy-2
numpy-2
September 2, 2024 10:57 10m 45s
Don't run NumPy 2 on Python 3.9 due to scikit-allel incompatibility Build NumPy 2 #4: Commit 30ed231 pushed by tomwhite
September 2, 2024 09:30 10m 34s numpy-2
numpy-2
September 2, 2024 09:30 10m 34s
Restrict to numpy<2.1 for numba compatibility Build NumPy 2 #3: Commit da74f47 pushed by tomwhite
September 2, 2024 09:24 3m 30s numpy-2
numpy-2
September 2, 2024 09:24 3m 30s
Restrict to numpy<2.1.0 for numba compatibility Build NumPy 2 #2: Commit d709210 pushed by tomwhite
September 2, 2024 09:21 1m 22s numpy-2
numpy-2
September 2, 2024 09:21 1m 22s
Add GitHub Actions workflow to run using NumPy 2 Build NumPy 2 #1: Commit c23f1f6 pushed by tomwhite
September 2, 2024 09:18 4m 11s numpy-2
numpy-2
September 2, 2024 09:18 4m 11s