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Remove VCF docs and refer to bio2zarr and vcztools Cubed #25: Commit eeef90b pushed by tomwhite
September 24, 2024 14:15 1m 36s remove-vcf
remove-vcf
September 24, 2024 14:15 1m 36s
Test on Python 3.12 Cubed #24: Commit 21c4f6a pushed by tomwhite
September 24, 2024 10:56 1m 36s python-3.12
python-3.12
September 24, 2024 10:56 1m 36s
Use sgkit.distarray for gwas_linear_regression Cubed #23: Commit 1de068b pushed by tomwhite
September 23, 2024 12:12 1m 52s dist-array-gwas
dist-array-gwas
September 23, 2024 12:12 1m 52s
Explicitly install Zarr main branch (v2) rather than the default (v3) Cubed #22: Commit 195decc pushed by tomwhite
September 19, 2024 09:10 2m 22s upstream-build-fixes
upstream-build-fixes
September 19, 2024 09:10 2m 22s
Temp change to run on PR Cubed #21: Commit 4e235f9 pushed by tomwhite
September 19, 2024 08:52 1m 36s upstream-build-fixes
upstream-build-fixes
September 19, 2024 08:52 1m 36s
Install dask[dataframe] explicitly to fix upstream error Cubed #20: Commit c1e7e6e pushed by tomwhite
September 19, 2024 08:49 1m 33s upstream-build-fixes
upstream-build-fixes
September 19, 2024 08:49 1m 33s
Update changelog Cubed #19: Commit f1fd955 pushed by tomwhite
September 17, 2024 13:47 1m 32s gwas-tutorial-vcf2zarr
gwas-tutorial-vcf2zarr
September 17, 2024 13:47 1m 32s
Use vcf2zarr in GWAS tutorial notebook Cubed #18: Commit 7094d3c pushed by tomwhite
September 16, 2024 14:40 1m 25s gwas-tutorial-vcf2zarr
gwas-tutorial-vcf2zarr
September 16, 2024 14:40 1m 25s
Try %%bash for all commands Cubed #17: Commit 21dc8ee pushed by tomwhite
September 16, 2024 14:33 1m 31s gwas-tutorial-vcf2zarr
gwas-tutorial-vcf2zarr
September 16, 2024 14:33 1m 31s
Try %%bash Cubed #16: Commit 801f7cc pushed by tomwhite
September 16, 2024 14:05 1m 23s gwas-tutorial-vcf2zarr
gwas-tutorial-vcf2zarr
September 16, 2024 14:05 1m 23s
Temporarily disable some workflows while debugging Cubed #15: Commit dddc908 pushed by tomwhite
September 16, 2024 13:55 1m 23s gwas-tutorial-vcf2zarr
gwas-tutorial-vcf2zarr
September 16, 2024 13:55 1m 23s
Add top-level astype function for Dask Cubed #14: Commit 4588f19 pushed by tomwhite
September 16, 2024 13:05 1m 41s dist-array-sample-stats
dist-array-sample-stats
September 16, 2024 13:05 1m 41s
Add top-level astype function for Dask Cubed #13: Commit 28edadb pushed by tomwhite
September 16, 2024 12:04 6m 26s dist-array-sample-stats
dist-array-sample-stats
September 16, 2024 12:04 6m 26s
Use sgkit.distarray for Hardy-Weinberg Equilibrium Cubed #12: Commit e8a7890 pushed by tomwhite
September 16, 2024 11:44 6m 18s dist-array-sample-stats
dist-array-sample-stats
September 16, 2024 11:44 6m 18s
Build docs with Python 3.10 Cubed #11: Commit 5c2f2a4 pushed by tomwhite
September 16, 2024 10:55 5m 59s gwas-tutorial-vcf2zarr
gwas-tutorial-vcf2zarr
September 16, 2024 10:55 5m 59s
Build docs with Python 3.10 Cubed #10: Commit c3ffc22 pushed by tomwhite
September 16, 2024 10:46 6m 6s gwas-tutorial-vcf2zarr
gwas-tutorial-vcf2zarr
September 16, 2024 10:46 6m 6s
Use vcf2zarr in GWAS tutorial notebook Cubed #9: Commit f5f96a7 pushed by tomwhite
September 16, 2024 10:13 6m 12s gwas-tutorial-vcf2zarr
gwas-tutorial-vcf2zarr
September 16, 2024 10:13 6m 12s
Update actions/upload-artifact to v4 in .github/workflows Cubed #8: Commit fe588fb pushed by tomwhite
September 11, 2024 13:25 1m 23s fix-docs-build
fix-docs-build
September 11, 2024 13:25 1m 23s
Use sgkit.distarray for count_variant_alleles and variant_stats Cubed #7: Commit ba39078 pushed by tomwhite
September 11, 2024 13:18 1m 21s dist-array-variant-stats
dist-array-variant-stats
September 11, 2024 13:18 1m 21s
Don't allow chunking in ploidy dimension Cubed #6: Commit 471d837 pushed by tomwhite
September 9, 2024 11:15 1m 37s dist-array
dist-array
September 9, 2024 11:15 1m 37s
Add GH actions workflow to test on Cubed Cubed #5: Commit b1dd259 pushed by tomwhite
September 6, 2024 12:59 1m 23s dist-array
dist-array
September 6, 2024 12:59 1m 23s
Change tests to only have multiple chunks in non-core dimensions Cubed #4: Commit e721eef pushed by tomwhite
September 2, 2024 13:05 4m 14s xarray-apply-ufunc
xarray-apply-ufunc
September 2, 2024 13:05 4m 14s
Add GH actions workflow to test on Cubed Cubed #3: Commit be61db6 pushed by tomwhite
September 2, 2024 11:11 3m 38s xarray-apply-ufunc
xarray-apply-ufunc
September 2, 2024 11:11 3m 38s
Add GH actions workflow to test on Cubed Cubed #2: Commit 2e91ce3 pushed by tomwhite
August 19, 2024 14:45 1m 18s xarray-apply-ufunc
xarray-apply-ufunc
August 19, 2024 14:45 1m 18s
Add GH actions workflow to test on Cubed Cubed #1: Commit 63e3be1 pushed by tomwhite
August 19, 2024 14:44 14s xarray-apply-ufunc
xarray-apply-ufunc
August 19, 2024 14:44 14s