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Refining the Uberon Euarchontoglires subset -- part 2 #2127
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@matentzn @rays22 cc @dosumis Note to self:
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Summing up the tasks we resolved to leave for a “second pass” at the Euarch slim:
Notes to self: |
This commit intends to add a conservative set of taxon constraints to some of the 2x classes. This PR is related to #2127 and the discussion [here.](#2158 (reply in thread))
This commit intends to add a conservative set of taxon constraints to some of the 2x classes. This PR is related to #2127 and the discussion [here.](#2158 (reply in thread))
Update: the broader issue of taxon restrictions was discussed at the Uberon editors meeting on 22/11/21: "We need more specific action items to deal with taxon stuff |
Alright, this is how I understand this ticket.
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Summary of 673 taxon constraints added as part of #2050Here is my list of the #2050-related taxon constraints that are in UBERON currently.
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This commit intends to roll back the 3x taxon constraints that were part of this ticket. The bulk addition of taxon constraints appear to include classes that clash with classes that genuinely overlap with *Mammalia*. See #2127 (comment) . If applied, this commit will fix #2050.
This commit intends to add a new `inSubset` ROBOT template. This commit is related to #2127 (comment) .
* Add a new inSubset ROBOT template This commit intends to add a new `inSubset` ROBOT template. This commit is related to #2127 (comment) . * Delete example line * Activate template - add OWL file it produces to components - add import statement on uberon-edit.obo - add other related updates - fix superfluous spaces in uberon-odk.yaml file * Activate template - add OWL file it produces to components * Fix incorrect product filename. * Update repo * Update incorrect owl filename * Remove in-taxon references * Re-import in-subset.owl * Replace four spaces with a tab in uberon.Makefile * This syntax error had caused problems.
This issue has not seen any activity in the past 6 months; it will be closed automatically in one year from now if no action is taken. |
This is still in progress. |
This issue has not seen any activity in the past 6 months; it will be closed automatically one year from now if no action is taken. |
This issue has been closed automatically because it has not been updated in 18 months. Please re-open if you still need this to be addressed. |
Remaining tasks
Originally posted by @rays22 in #2050 (comment)
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